Steps for Data Import

  1. Navigate to Exploratory Analysis Tab

    Click on the Exploratory Analysis tab located in the left sidebar of this page.

    Data Import Tab
    Data Import Tab

  2. Upload Data

    At the top right, you have two options:

    • Click [Example] for an example illustration.
    • Click [Upload] to upload your own data, which should be in tab-delimited text or csv file format.

    Ensure your file follows the correct format shown below. For large datasets (e.g., 50,000 rows in the online version), consider using the offline version.

    Data will be displayed after successful upload.

    Import Data
    Import Data

    JUMP-shiny Data:

    If your data contains Accession number, Gene Name, Description, and samples, use jumpshiny to upload. The first column is required.

    Jumpshiny
    Jumpshiny

    JUMPq Result Format:

    If your data sample starts from the 24th column, use jumpq to upload.

    Jumpq
    Jumpq

    JUMPq Batch Result Format:

    If your data contains batch info, use jump_batch to upload.

    Jumpq Batch
    Jumpq Batch

  3. Group Assignment

    After loading the dataset, input your grouping in the [Group Assignment] panel.

    Group Assignment
    Group Assignment
    • The first column should be your sample name (matching the column’s name of your input dataset).
    • Only the columns listed here will be included in the analysis.
    • The second column is your grouping name (e.g., “control” or “sample”).
    • Headers are required.
    Group Info
    Group Info

  4. Confirm and Analyze

    Click the [Confirmed] button, wait for a while, and the [Summary of Data] and [Sample Distribution] will display more information about your dataset. Modify and save plots for further study or publication.

    Distribution
    Distribution



    PCA Plot
    PCA Plot



    Heatmap
    Heatmap

    Change the group by selecting options in the [Group Selection] Panel.

    Group Selection
    Group Selection